VagrantでJupyter LabとPercona Serverをインストールした仮想マシン(Debian Stretch/9.3)を構築する

Jupyter Labでインタラクティブなコンピューティング環境を提供する事ができます。

〇Jupyter Labの画面

構築方法

以下のVagrantfileで、Jupyter LabとPercona Serverをインストールした仮想マシン(Debian Stretch/9.3)を構築できます。

Vagrantfile

VAGRANTFILE_API_VERSION = "2"
Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
  config.vm.box = "bento/debian-9.3"
  config.vm.hostname = "db93jupyterlabpercona"
  config.vm.provider :virtualbox do |vbox|
     vbox.name = "db93jupyterlabpercona"
     vbox.cpus = 2
     vbox.memory = 2048
     vbox.customize ["modifyvm", :id, "--nicpromisc2","allow-all"]
  end
config.vm.network "private_network", ip: "192.168.55.107", :netmask => "255.255.255.0"
config.vm.network "public_network", ip:"192.168.1.107", :netmask => "255.255.255.0"
  config.vm.provision "shell", inline: <<-SHELL
apt-get -y install task-japanese
sed -i -e 's/# ja_JP.UTF-8 UTF-8/ja_JP.UTF-8 UTF-8/' /etc/locale.gen
locale-gen
update-locale LANG=ja_JP.UTF-8
localectl set-locale LANG=ja_JP.UTF-8
localectl set-keymap jp106
apt-get update
#DEBIAN_FRONTEND=noninteractive apt-get -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confold" upgrade

# install percona server
export DEBIAN_FRONTEND=noninteractive
echo "percona-server-server-5.7 percona-server-server/root_password password root" | sudo debconf-set-selections
echo "percona-server-server-5.7 percona-server-server/root_password_again password root" | sudo debconf-set-selections
wget https://repo.percona.com/apt/percona-release_0.1-4.$(lsb_release -sc)_all.deb
dpkg -i percona-release_0.1-4.$(lsb_release -sc)_all.deb
apt-get update
apt-get -y install percona-server-server-5.7
mysql -uroot -proot -e "CREATE DATABASE test DEFAULT CHARACTER SET utf8mb4;"
mysql -uroot -proot -e "CREATE USER test@localhost IDENTIFIED BY 'test';"
mysql -uroot -proot -e "GRANT ALL PRIVILEGES ON test.* TO 'test'@'localhost';"
mysql -uroot -proot -e "FLUSH PRIVILEGES;"
mysql -utest -ptest test -e "create table messages (message_id integer not null, message varchar(100));"
mysql -utest -ptest test -e "insert into messages value (1, 'hello world.');"
mysql -utest -ptest test -e "insert into messages value (2, 'test message.');"
mysql -utest -ptest test -e "select * from messages;"

# install anaconda
wget https://repo.continuum.io/archive/Anaconda3-5.1.0-Linux-x86_64.sh
chmod +x Anaconda3-5.1.0-Linux-x86_64.sh
./Anaconda3-5.1.0-Linux-x86_64.sh -b -p /opt/anaconda
source /opt/anaconda/bin/activate
pip install --upgrade pip
pip install jupyterlab

# install mysqlclient
apt-get -y install default-libmysqlclient-dev
pip install mysqlclient

useradd py
mkdir -p /home/py
chown -R py:py /home/py
sudo -u py bash -c "mkdir /home/py/.jupyter"
sudo -u py bash -c "cat << EOF > /home/py/.jupyter/jupyter_notebook_config.py
conf = get_config()
conf.NotebookApp.ip = '*'
conf.NotebookApp.open_browser = False
conf.NotebookApp.port = 8080
conf.NotebookApp.token = 'jupyter'
EOF"

cat << EOF > /etc/systemd/system/jupyter.service
[Unit]
Description=Jupyter notebook
[Service]
Type=simple
ExecStartPre=source /opt/anaconda/bin/activate
ExecStart=/opt/anaconda/bin/jupyter lab
User=py
Group=py
WorkingDirectory=/home/py
Restart=always
RestartSec=10
[Install]
WantedBy=multi-user.target
EOF
sudo systemctl enable jupyter
sudo systemctl start jupyter

echo 'access -> http://192.168.55.107:8080/?token=jupyter'
SHELL
end

○動作確認用コード

import MySQLdb

con = MySQLdb.connect(
  user='test',
  passwd='test',
  host='localhost',
  db='test')

try:
  cur= con.cursor()
  sql = "select message_id, message from messages"
  cur.execute(sql)

  for row in cur.fetchall():
    print(row)

except MySQLdb.Error as er:
    print('MySQLdb.Error:', er)
cur.close
con.close

関連情報

・Jupyterに関する他の情報はこちらを参照してください。